J5_6PC8_003

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6PC8|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PC8_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.1052

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PC8|1|I|C|584
6PC8|1|I|G|585
6PC8|1|I|A|586
6PC8|1|I|C|587
6PC8|1|I|U|588
6PC8|1|I|U|589
*
6PC8|1|I|A|668
6PC8|1|I|G|669
6PC8|1|I|A|670
6PC8|1|I|C|671
*
6PC8|1|I|G|809
6PC8|1|I|U|810
6PC8|1|I|U|811
6PC8|1|I|C|812
*
6PC8|1|I|G|1195
6PC8|1|I|C|1196
*
6PC8|1|I|G|1250
6PC8|1|I|C|1251
6PC8|1|I|G|1252
6PC8|1|I|A|1253
6PC8|1|I|A|1254
6PC8|1|I|U|1255
6PC8|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4