J5_6PC8_006
3D structure
- PDB id
- 6PC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound 40q
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6PC8|1|I|U|2076, 6PC8|1|I|G|2428, 6PC8|1|I|G|2429, 6PC8|1|I|A|2430, 6PC8|1|I|U|2431, 6PC8|1|I|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6PC8_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0864
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6PC8|1|I|U|2074
6PC8|1|I|U|2075
6PC8|1|I|U|2076
6PC8|1|I|A|2077
*
6PC8|1|I|U|2243
6PC8|1|I|U|2244
6PC8|1|I|U|2245
6PC8|1|I|G|2246
*
6PC8|1|I|C|2258
6PC8|1|I|U|2259
*
6PC8|1|I|A|2281
6PC8|1|I|G|2282
*
6PC8|1|I|C|2427
6PC8|1|I|G|2428
6PC8|1|I|G|2429
6PC8|1|I|A|2430
6PC8|1|I|U|2431
6PC8|1|I|A|2432
6PC8|1|I|A|2433
6PC8|1|I|A|2434
6PC8|1|I|A|2435
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
Coloring options: