J5_6PCH_006

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6PCH|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCH_006 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0969

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PCH|1|I|C|584
6PCH|1|I|G|585
6PCH|1|I|A|586
6PCH|1|I|C|587
6PCH|1|I|U|588
6PCH|1|I|U|589
*
6PCH|1|I|A|668
6PCH|1|I|G|669
6PCH|1|I|A|670
6PCH|1|I|C|671
*
6PCH|1|I|G|809
6PCH|1|I|U|810
6PCH|1|I|U|811
6PCH|1|I|C|812
*
6PCH|1|I|G|1195
6PCH|1|I|C|1196
*
6PCH|1|I|G|1250
6PCH|1|I|C|1251
6PCH|1|I|G|1252
6PCH|1|I|A|1253
6PCH|1|I|A|1254
6PCH|1|I|U|1255
6PCH|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4