J5_6PCR_003

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6PCR|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCR_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0793

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PCR|1|I|C|584
6PCR|1|I|G|585
6PCR|1|I|A|586
6PCR|1|I|C|587
6PCR|1|I|U|588
6PCR|1|I|U|589
*
6PCR|1|I|A|668
6PCR|1|I|G|669
6PCR|1|I|A|670
6PCR|1|I|C|671
*
6PCR|1|I|G|809
6PCR|1|I|U|810
6PCR|1|I|U|811
6PCR|1|I|C|812
*
6PCR|1|I|G|1195
6PCR|1|I|C|1196
*
6PCR|1|I|G|1250
6PCR|1|I|C|1251
6PCR|1|I|G|1252
6PCR|1|I|A|1253
6PCR|1|I|A|1254
6PCR|1|I|U|1255
6PCR|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4