J5_6PCS_003

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6PCS|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCS_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0768

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6PCS|1|I|C|584
6PCS|1|I|G|585
6PCS|1|I|A|586
6PCS|1|I|C|587
6PCS|1|I|U|588
6PCS|1|I|U|589
*
6PCS|1|I|A|668
6PCS|1|I|G|669
6PCS|1|I|A|670
6PCS|1|I|C|671
*
6PCS|1|I|G|809
6PCS|1|I|U|810
6PCS|1|I|U|811
6PCS|1|I|C|812
*
6PCS|1|I|G|1195
6PCS|1|I|C|1196
*
6PCS|1|I|G|1250
6PCS|1|I|C|1251
6PCS|1|I|G|1252
6PCS|1|I|A|1253
6PCS|1|I|A|1254
6PCS|1|I|U|1255
6PCS|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4