J5_6PCS_006

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

6PCS|1|I|U|2076, 6PCS|1|I|G|2428, 6PCS|1|I|G|2429, 6PCS|1|I|A|2430, 6PCS|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCS_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0813

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6PCS|1|I|U|2074
6PCS|1|I|U|2075
6PCS|1|I|U|2076
6PCS|1|I|A|2077
*
6PCS|1|I|U|2243
6PCS|1|I|U|2244
6PCS|1|I|U|2245
6PCS|1|I|G|2246
*
6PCS|1|I|C|2258
6PCS|1|I|U|2259
*
6PCS|1|I|A|2281
6PCS|1|I|G|2282
*
6PCS|1|I|C|2427
6PCS|1|I|G|2428
6PCS|1|I|G|2429
6PCS|1|I|A|2430
6PCS|1|I|U|2431
6PCS|1|I|A|2432
6PCS|1|I|A|2433
6PCS|1|I|A|2434
6PCS|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15