J5_6PCT_006

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

6PCT|1|I|U|2076, 6PCT|1|I|G|2428, 6PCT|1|I|G|2429, 6PCT|1|I|A|2430, 6PCT|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCT_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0708

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6PCT|1|I|U|2074
6PCT|1|I|U|2075
6PCT|1|I|U|2076
6PCT|1|I|A|2077
*
6PCT|1|I|U|2243
6PCT|1|I|U|2244
6PCT|1|I|U|2245
6PCT|1|I|G|2246
*
6PCT|1|I|C|2258
6PCT|1|I|U|2259
*
6PCT|1|I|A|2281
6PCT|1|I|G|2282
*
6PCT|1|I|C|2427
6PCT|1|I|G|2428
6PCT|1|I|G|2429
6PCT|1|I|A|2430
6PCT|1|I|U|2431
6PCT|1|I|A|2432
6PCT|1|I|A|2433
6PCT|1|I|A|2434
6PCT|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15