J5_6PPF_004

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

6PPF|1|A|G|1787, 6PPF|1|A|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PPF_004 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1459

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|G|1719
6PPF|1|A|C|1720
6PPF|1|A|A|1721
6PPF|1|A|A|1722
6PPF|1|A|A|1723
6PPF|1|A|A|1724
6PPF|1|A|U|1725
6PPF|1|A|G|1726
6PPF|1|A|A|1727
*
6PPF|1|A|U|1751
6PPF|1|A|G|1752
*
6PPF|1|A|C|1780
6PPF|1|A|C|1781
*
6PPF|1|A|G|1785
6PPF|1|A|U|1786
6PPF|1|A|G|1787
6PPF|1|A|A|1788
6PPF|1|A|A|1789
6PPF|1|A|U|1790
6PPF|1|A|A|1791
6PPF|1|A|G|1792
6PPF|1|A|G|1793
*
6PPF|1|A|C|2017
6PPF|1|A|A|2018
6PPF|1|A|C|2019

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19