J5_6Q95_001

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6Q95|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6Q95_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1068

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6Q95|1|1|C|47
6Q95|1|1|G|48
6Q95|1|1|A|49
6Q95|1|1|U|50
6Q95|1|1|G|51
6Q95|1|1|A|52
6Q95|1|1|A|53
6Q95|1|1|G|54
*
6Q95|1|1|C|116
6Q95|1|1|G|117
6Q95|1|1|A|118
6Q95|1|1|A|119
6Q95|1|1|U|120
6Q95|1|1|G|121
*
6Q95|1|1|C|130
6Q95|1|1|G|131
*
6Q95|1|1|C|148
6Q95|1|1|A|149
6Q95|1|1|C|150
*
6Q95|1|1|G|176
6Q95|1|1|G|177
6Q95|1|1|G|178

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34