J5_6Q95_007

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6Q95_007 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0907

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|2|C|36
6Q95|1|2|U|37
6Q95|1|2|G|38
6Q95|1|2|G|39
*
6Q95|1|2|C|403
6Q95|1|2|U|404
6Q95|1|2|U|405
6Q95|1|2|G|406
*
6Q95|1|2|C|436
6Q95|1|2|U|437
6Q95|1|2|G|438
6Q95|1|2|A|439
6Q95|1|2|A|441
6Q95|1|2|C|442
*
6Q95|1|2|G|492
6Q95|1|2|G|493
6Q95|1|2|U|494
6Q95|1|2|A|495
6Q95|1|2|A|496
6Q95|1|2|U|498
6Q95|1|2|A|499
6Q95|1|2|G|500
*
6Q95|1|2|C|545
6Q95|1|2|G|546
6Q95|1|2|A|547
6Q95|1|2|G|548

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12