J5_6QDW_004

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6QDW|1|b|U|1760, 6QDW|1|b|G|1765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6QDW_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0705

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6QDW|1|b|G|1676
6QDW|1|b|C|1677
6QDW|1|b|A|1678
6QDW|1|b|A|1679
6QDW|1|b|A|1680
6QDW|1|b|A|1681
6QDW|1|b|U|1682
6QDW|1|b|G|1683
6QDW|1|b|G|1684
*
6QDW|1|b|C|1708
6QDW|1|b|G|1709
*
6QDW|1|b|U|1753
6QDW|1|b|C|1754
*
6QDW|1|b|G|1758
6QDW|1|b|A|1759
6QDW|1|b|U|1760
6QDW|1|b|A|1761
6QDW|1|b|C|1762
6QDW|1|b|C|1763
6QDW|1|b|A|1764
6QDW|1|b|G|1765
6QDW|1|b|C|1766
*
6QDW|1|b|G|1992
6QDW|1|b|G|1993
6QDW|1|b|C|1994

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19