J5_6QNQ_003

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6QNQ|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6QNQ_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0844

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6QNQ|1|14|C|47
6QNQ|1|14|G|48
6QNQ|1|14|A|49
6QNQ|1|14|U|50
6QNQ|1|14|G|51
6QNQ|1|14|A|52
6QNQ|1|14|A|53
6QNQ|1|14|G|54
*
6QNQ|1|14|C|116
6QNQ|1|14|G|117
6QNQ|1|14|A|118
6QNQ|1|14|A|119
6QNQ|1|14|U|120
6QNQ|1|14|G|121
*
6QNQ|1|14|C|130
6QNQ|1|14|G|131
*
6QNQ|1|14|C|148
6QNQ|1|14|A|149
6QNQ|1|14|C|150
*
6QNQ|1|14|G|176
6QNQ|1|14|G|177
6QNQ|1|14|G|178

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34