J5_6QNR_010

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6QNR_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0717

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6QNR|1|1G|C|36
6QNR|1|1G|U|37
6QNR|1|1G|G|38
6QNR|1|1G|G|39
*
6QNR|1|1G|C|403
6QNR|1|1G|U|404
6QNR|1|1G|U|405
6QNR|1|1G|G|406
*
6QNR|1|1G|C|436
6QNR|1|1G|U|437
6QNR|1|1G|G|438
6QNR|1|1G|A|439
6QNR|1|1G|A|440
6QNR|1|1G|C|442
*
6QNR|1|1G|G|492
6QNR|1|1G|G|493
6QNR|1|1G|U|494
6QNR|1|1G|A|495
6QNR|1|1G|A|496
6QNR|1|1G|U|497
6QNR|1|1G|A|498
6QNR|1|1G|G|500
*
6QNR|1|1G|C|545
6QNR|1|1G|G|546
6QNR|1|1G|A|547
6QNR|1|1G|G|548

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 3A

30S ribosomal protein S12