J5_6QNR_015
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6QNR|1|1H|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6QNR_015 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0604
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6QNR|1|1H|C|608
6QNR|1|1H|G|609
6QNR|1|1H|A|610
6QNR|1|1H|C|611
6QNR|1|1H|U|612
6QNR|1|1H|C|613
*
6QNR|1|1H|G|716
6QNR|1|1H|G|717
6QNR|1|1H|A|718
6QNR|1|1H|C|719
*
6QNR|1|1H|G|857
6QNR|1|1H|U|858
6QNR|1|1H|U|859
6QNR|1|1H|C|860
*
6QNR|1|1H|G|1241
6QNR|1|1H|C|1242
*
6QNR|1|1H|G|1297
6QNR|1|1H|C|1298
6QNR|1|1H|G|1299
6QNR|1|1H|A|1300
6QNR|1|1H|A|1301
6QNR|1|1H|U|1302
6QNR|1|1H|G|1303
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain 78
- 50S ribosomal protein L15
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain Q8
- 50S ribosomal protein L35
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