J5_6QNR_019
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6QNR|1|1H|U|2099, 6QNR|1|1H|G|2441, 6QNR|1|1H|G|2442, 6QNR|1|1H|A|2443, 6QNR|1|1H|U|2444
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6QNR_019 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0758
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6QNR|1|1H|U|2097
6QNR|1|1H|U|2098
6QNR|1|1H|U|2099
6QNR|1|1H|A|2100
*
6QNR|1|1H|U|2256
6QNR|1|1H|U|2257
6QNR|1|1H|U|2258
6QNR|1|1H|G|2259
*
6QNR|1|1H|C|2271
6QNR|1|1H|G|2272
*
6QNR|1|1H|C|2294
6QNR|1|1H|G|2295
*
6QNR|1|1H|C|2440
6QNR|1|1H|G|2441
6QNR|1|1H|G|2442
6QNR|1|1H|A|2443
6QNR|1|1H|U|2444
6QNR|1|1H|A|2445
6QNR|1|1H|A|2446
6QNR|1|1H|A|2447
6QNR|1|1H|A|2448
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 3K
- Transfer RNA; tRNA
- Chain 78
- 50S ribosomal protein L15
- Chain I8
- 50S ribosomal protein L27
- Chain J8
- 50S ribosomal protein L28
Coloring options: