J5_6R6G_006

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6R6G|1|K|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6R6G_006 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.108

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6R6G|1|K|C|30
6R6G|1|K|U|31
6R6G|1|K|U|32
6R6G|1|K|G|33
6R6G|1|K|U|34
*
6R6G|1|K|A|521
6R6G|1|K|A|522
6R6G|1|K|A|523
6R6G|1|K|U|524
6R6G|1|K|A|525
6R6G|1|K|A|526
6R6G|1|K|C|527
*
6R6G|1|K|G|558
6R6G|1|K|G|559
6R6G|1|K|A|560
6R6G|1|K|A|561
6R6G|1|K|U|562
6R6G|1|K|G|563
*
6R6G|1|K|C|592
6R6G|1|K|C|593
6R6G|1|K|A|594
6R6G|1|K|U|595
*
6R6G|1|K|A|641
6R6G|1|K|U|642
6R6G|1|K|A|643
6R6G|1|K|G|644

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain DD

Ribosomal protein S9 (Predicted)

Chain VV

Ribosomal protein S23