J5_6R6P_006

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6R6P|1|K|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6R6P_006 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.134

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6R6P|1|K|C|30
6R6P|1|K|U|31
6R6P|1|K|U|32
6R6P|1|K|G|33
6R6P|1|K|U|34
*
6R6P|1|K|A|521
6R6P|1|K|A|522
6R6P|1|K|A|523
6R6P|1|K|U|524
6R6P|1|K|A|525
6R6P|1|K|A|526
6R6P|1|K|C|527
*
6R6P|1|K|G|558
6R6P|1|K|G|559
6R6P|1|K|A|560
6R6P|1|K|A|561
6R6P|1|K|U|562
6R6P|1|K|G|563
*
6R6P|1|K|C|592
6R6P|1|K|C|593
6R6P|1|K|A|594
6R6P|1|K|U|595
*
6R6P|1|K|A|641
6R6P|1|K|U|642
6R6P|1|K|A|643
6R6P|1|K|G|644

Current chains

Chain K

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain VV

Ribosomal protein S23

Chain XX

Ribosomal protein S9 (Predicted)