J5_6S0Z_003
3D structure
- PDB id
- 6S0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6S0Z|1|A|G|1785, 6S0Z|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6S0Z_003 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0814
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6S0Z|1|A|G|1718
6S0Z|1|A|C|1719
6S0Z|1|A|A|1720
6S0Z|1|A|A|1721
6S0Z|1|A|A|1722
6S0Z|1|A|A|1723
6S0Z|1|A|U|1724
6S0Z|1|A|G|1725
6S0Z|1|A|A|1726
*
6S0Z|1|A|U|1750
6S0Z|1|A|G|1751
*
6S0Z|1|A|C|1778
6S0Z|1|A|C|1779
*
6S0Z|1|A|G|1783
6S0Z|1|A|U|1784
6S0Z|1|A|G|1785
6S0Z|1|A|A|1786
6S0Z|1|A|A|1787
6S0Z|1|A|U|1788
6S0Z|1|A|A|1789
6S0Z|1|A|G|1790
6S0Z|1|A|G|1791
*
6S0Z|1|A|C|2015
6S0Z|1|A|A|2016
6S0Z|1|A|C|2017
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L14
- Chain N
- 50S ribosomal protein L19
Coloring options: