J5_6S12_004

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

6S12|1|A|G|1785, 6S12|1|A|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6S12_004 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.1267

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6S12|1|A|G|1718
6S12|1|A|C|1719
6S12|1|A|A|1720
6S12|1|A|A|1721
6S12|1|A|A|1722
6S12|1|A|A|1723
6S12|1|A|U|1724
6S12|1|A|G|1725
6S12|1|A|A|1726
*
6S12|1|A|U|1750
6S12|1|A|G|1751
*
6S12|1|A|C|1778
6S12|1|A|C|1779
*
6S12|1|A|G|1783
6S12|1|A|U|1784
6S12|1|A|G|1785
6S12|1|A|A|1786
6S12|1|A|A|1787
6S12|1|A|U|1788
6S12|1|A|A|1789
6S12|1|A|G|1790
6S12|1|A|G|1791
*
6S12|1|A|C|2015
6S12|1|A|A|2016
6S12|1|A|C|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L14

Chain N

50S ribosomal protein L19