3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
Length
25 nucleotides
Bulged bases
6S13|1|A|G|1785, 6S13|1|A|G|1790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6S13_004 not in the Motif Atlas
Homologous match to J5_4WF9_005
Geometric discrepancy: 0.1412
The information below is about J5_4WF9_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6S13|1|A|G|1718
6S13|1|A|C|1719
6S13|1|A|A|1720
6S13|1|A|A|1721
6S13|1|A|A|1722
6S13|1|A|A|1723
6S13|1|A|U|1724
6S13|1|A|G|1725
6S13|1|A|A|1726
*
6S13|1|A|U|1750
6S13|1|A|G|1751
*
6S13|1|A|C|1778
6S13|1|A|C|1779
*
6S13|1|A|G|1783
6S13|1|A|U|1784
6S13|1|A|G|1785
6S13|1|A|A|1786
6S13|1|A|A|1787
6S13|1|A|U|1788
6S13|1|A|A|1789
6S13|1|A|G|1790
6S13|1|A|G|1791
*
6S13|1|A|C|2015
6S13|1|A|A|2016
6S13|1|A|C|2017

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain I
50S ribosomal protein L14
Chain N
50S ribosomal protein L19

Coloring options:


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