J5_6SGC_001

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*CGAUGAAG*CGAACG*CG*UAC

Length

22 nucleotides

Bulged bases

6SGC|1|84|U|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SGC_001 not in the Motif Atlas

Homologous match to J5_8P9A_010

Geometric discrepancy: 0.1026

The information below is about J5_8P9A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SGC|1|54|G|19
6SGC|1|54|U|20
6SGC|1|54|G|21
*
6SGC|1|84|C|35
6SGC|1|84|G|36
6SGC|1|84|A|37
6SGC|1|84|U|38
6SGC|1|84|G|39
6SGC|1|84|A|40
6SGC|1|84|A|41
6SGC|1|84|G|42
*
6SGC|1|84|C|101
6SGC|1|84|G|102
6SGC|1|84|A|103
6SGC|1|84|A|104
6SGC|1|84|C|105
6SGC|1|84|G|106
*
6SGC|1|84|C|113
6SGC|1|84|G|114
*
6SGC|1|84|U|136
6SGC|1|84|A|137
6SGC|1|84|C|138

Current chains

Chain 54

28S ribosomal RNA

Chain 84

5.8S ribosomal RNA

Nearby chains

Chain N2

Ribosomal protein L15

Chain X2

Ribosomal_L23eN domain-containing protein

Chain h2

uL29

Chain j2

Ribosomal protein L37

Chain l2

eL39