J5_6SGC_008
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6SGC|1|A1|U|55, 6SGC|1|A1|A|92, 6SGC|1|A1|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SGC_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0599
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|C|53
6SGC|1|A1|A|54
6SGC|1|A1|U|55
6SGC|1|A1|G|56
*
6SGC|1|A1|C|89
6SGC|1|A1|G|90
6SGC|1|A1|A|91
6SGC|1|A1|A|92
6SGC|1|A1|U|93
6SGC|1|A1|G|94
6SGC|1|A1|G|95
6SGC|1|A1|C|96
*
6SGC|1|A1|G|434
6SGC|1|A1|A|435
6SGC|1|A1|G|436
*
6SGC|1|A1|C|457
6SGC|1|A1|A|458
6SGC|1|A1|C|459
*
6SGC|1|A1|G|470
6SGC|1|A1|G|471
6SGC|1|A1|C|472
6SGC|1|A1|A|473
6SGC|1|A1|G|474
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- 40S ribosomal protein S4
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- 40S ribosomal protein S8
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain V2
- Ribosomal protein L23
- Chain Z1
- eS24
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