3D structure

PDB id
6SGC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled on a poly(A) tail
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6SGC|1|A1|U|55, 6SGC|1|A1|A|92, 6SGC|1|A1|C|472
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6SGC_008 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0599
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6SGC|1|A1|C|53
6SGC|1|A1|A|54
6SGC|1|A1|U|55
6SGC|1|A1|G|56
*
6SGC|1|A1|C|89
6SGC|1|A1|G|90
6SGC|1|A1|A|91
6SGC|1|A1|A|92
6SGC|1|A1|U|93
6SGC|1|A1|G|94
6SGC|1|A1|G|95
6SGC|1|A1|C|96
*
6SGC|1|A1|G|434
6SGC|1|A1|A|435
6SGC|1|A1|G|436
*
6SGC|1|A1|C|457
6SGC|1|A1|A|458
6SGC|1|A1|C|459
*
6SGC|1|A1|G|470
6SGC|1|A1|G|471
6SGC|1|A1|C|472
6SGC|1|A1|A|473
6SGC|1|A1|G|474

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain F1
40S ribosomal protein S4
Chain H1
40S ribosomal protein S6
Chain J1
40S ribosomal protein S8
Chain K1
Ribosomal protein S9 (Predicted)
Chain V2
Ribosomal protein L23
Chain Z1
eS24

Coloring options:


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