J5_6SKF_008

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAG*CGCA(OMG)*(4AC)GACAGG*CG(OMG)*(4AC)GGAG

Length

24 nucleotides

Bulged bases

6SKF|1|BA|A|734, 6SKF|1|BA|G|780

QA status

Modified nucleotides: OMG, 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SKF_008 not in the Motif Atlas

Homologous match to J5_4V9F_005

Geometric discrepancy: 0.1761

The information below is about J5_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_63867.1

Basepair signature

cWW-F-F-F-F-cWW-cHW-cWW-F-F-cWW-F-cWW-cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6SKF|1|BA|C|692
6SKF|1|BA|G|693
6SKF|1|BA|A|694
6SKF|1|BA|G|695
*
6SKF|1|BA|C|719
6SKF|1|BA|G|720
6SKF|1|BA|C|721
6SKF|1|BA|A|722
6SKF|1|BA|OMG|723
*
6SKF|1|BA|4AC|730
6SKF|1|BA|G|731
6SKF|1|BA|A|732
6SKF|1|BA|C|733
6SKF|1|BA|A|734
6SKF|1|BA|G|735
6SKF|1|BA|G|736
*
6SKF|1|BA|C|761
6SKF|1|BA|G|762
6SKF|1|BA|OMG|763
*
6SKF|1|BA|4AC|778
6SKF|1|BA|G|779
6SKF|1|BA|G|780
6SKF|1|BA|A|781
6SKF|1|BA|G|782

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e