J5_6SKF_009
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GCAAAUUGG*UG*UC*GUGACUAG(OMG)*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6SKF|1|BA|G|1886, 6SKF|1|BA|G|1891
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SKF_009 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.1171
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKF|1|BA|G|1822
6SKF|1|BA|C|1823
6SKF|1|BA|A|1824
6SKF|1|BA|A|1825
6SKF|1|BA|A|1826
6SKF|1|BA|U|1827
6SKF|1|BA|U|1828
6SKF|1|BA|G|1829
6SKF|1|BA|G|1830
*
6SKF|1|BA|U|1854
6SKF|1|BA|G|1855
*
6SKF|1|BA|U|1879
6SKF|1|BA|C|1880
*
6SKF|1|BA|G|1884
6SKF|1|BA|U|1885
6SKF|1|BA|G|1886
6SKF|1|BA|A|1887
6SKF|1|BA|C|1888
6SKF|1|BA|U|1889
6SKF|1|BA|A|1890
6SKF|1|BA|G|1891
6SKF|1|BA|OMG|1892
*
6SKF|1|BA|C|2101
6SKF|1|BA|A|2102
6SKF|1|BA|C|2103
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain Aa
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- 50S ribosomal protein L3
- Chain BL
- 50S ribosomal protein L14
- Chain BS
- 50S ribosomal protein L19e
- Chain BY
- 50S ribosomal protein L24e
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