J5_6SKF_011
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUA*UUUG*CA*(5MU)G*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6SKF|1|BA|U|2188, 6SKF|1|BA|A|2534, 6SKF|1|BA|G|2535, 6SKF|1|BA|A|2536, 6SKF|1|BA|A|2537
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SKF_011 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.1395
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SKF|1|BA|U|2186
6SKF|1|BA|U|2187
6SKF|1|BA|U|2188
6SKF|1|BA|A|2189
*
6SKF|1|BA|U|2345
6SKF|1|BA|U|2346
6SKF|1|BA|U|2347
6SKF|1|BA|G|2348
*
6SKF|1|BA|C|2361
6SKF|1|BA|A|2362
*
6SKF|1|BA|5MU|2384
6SKF|1|BA|G|2385
*
6SKF|1|BA|C|2533
6SKF|1|BA|A|2534
6SKF|1|BA|G|2535
6SKF|1|BA|A|2536
6SKF|1|BA|A|2537
6SKF|1|BA|A|2538
6SKF|1|BA|A|2539
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain BO
- 50S ribosomal protein L15
- Chain BP
- 50S ribosomal protein L15e
- Chain BU
- 50S ribosomal protein L21e
- Chain Bl
- 50S ribosomal protein L44e
Coloring options: