J5_6SNT_007

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

6SNT|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SNT_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0792

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6SNT|1|2|C|31
6SNT|1|2|U|32
6SNT|1|2|U|33
6SNT|1|2|G|34
6SNT|1|2|U|35
*
6SNT|1|2|A|473
6SNT|1|2|A|474
6SNT|1|2|A|475
6SNT|1|2|U|476
6SNT|1|2|A|477
6SNT|1|2|A|478
6SNT|1|2|C|479
*
6SNT|1|2|G|509
6SNT|1|2|G|510
6SNT|1|2|A|511
6SNT|1|2|A|512
6SNT|1|2|U|513
6SNT|1|2|G|514
*
6SNT|1|2|C|543
6SNT|1|2|A|544
6SNT|1|2|A|545
6SNT|1|2|U|546
*
6SNT|1|2|A|592
6SNT|1|2|U|593
6SNT|1|2|A|594
6SNT|1|2|G|595

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A