J5_6SPB_006
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6SPB|1|A|U|2063, 6SPB|1|A|G|2415, 6SPB|1|A|G|2416, 6SPB|1|A|A|2417, 6SPB|1|A|U|2418
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SPB_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1019
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SPB|1|A|U|2061
6SPB|1|A|U|2062
6SPB|1|A|U|2063
6SPB|1|A|A|2064
*
6SPB|1|A|U|2230
6SPB|1|A|U|2231
6SPB|1|A|U|2232
6SPB|1|A|G|2233
*
6SPB|1|A|C|2245
6SPB|1|A|U|2246
*
6SPB|1|A|A|2268
6SPB|1|A|G|2269
*
6SPB|1|A|C|2414
6SPB|1|A|G|2415
6SPB|1|A|G|2416
6SPB|1|A|A|2417
6SPB|1|A|U|2418
6SPB|1|A|A|2419
6SPB|1|A|A|2420
6SPB|1|A|A|2421
6SPB|1|A|A|2422
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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