J5_6SPD_003
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6SPD|1|A|U|1242
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SPD_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1144
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6SPD|1|A|C|574
6SPD|1|A|G|575
6SPD|1|A|A|576
6SPD|1|A|C|577
6SPD|1|A|U|578
6SPD|1|A|U|579
*
6SPD|1|A|A|658
6SPD|1|A|G|659
6SPD|1|A|A|660
6SPD|1|A|C|661
*
6SPD|1|A|G|799
6SPD|1|A|U|800
6SPD|1|A|U|801
6SPD|1|A|C|802
*
6SPD|1|A|G|1182
6SPD|1|A|C|1183
*
6SPD|1|A|G|1237
6SPD|1|A|C|1238
6SPD|1|A|G|1239
6SPD|1|A|A|1240
6SPD|1|A|A|1241
6SPD|1|A|U|1242
6SPD|1|A|G|1243
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
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