J5_6SPG_004
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 6SPG|1|A|G|1750
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SPG_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1373
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SPG|1|A|G|1664
6SPG|1|A|C|1665
6SPG|1|A|A|1666
6SPG|1|A|A|1667
6SPG|1|A|A|1668
6SPG|1|A|A|1669
6SPG|1|A|U|1670
6SPG|1|A|G|1671
6SPG|1|A|G|1672
*
6SPG|1|A|C|1696
6SPG|1|A|G|1697
*
6SPG|1|A|U|1738
6SPG|1|A|C|1739
*
6SPG|1|A|G|1743
6SPG|1|A|A|1744
6SPG|1|A|U|1745
6SPG|1|A|A|1746
6SPG|1|A|C|1747
6SPG|1|A|C|1748
6SPG|1|A|A|1749
6SPG|1|A|G|1750
6SPG|1|A|G|1751
*
6SPG|1|A|C|1975
6SPG|1|A|G|1976
6SPG|1|A|C|1977
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: