J5_6SV4_029
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SV4_029 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0785
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|ZQ|G|658
6SV4|1|ZQ|G|659
6SV4|1|ZQ|A|660
6SV4|1|ZQ|G|661
6SV4|1|ZQ|U|662
6SV4|1|ZQ|C|663
*
6SV4|1|ZQ|G|799
6SV4|1|ZQ|G|800
6SV4|1|ZQ|A|801
6SV4|1|ZQ|C|802
*
6SV4|1|ZQ|G|941
6SV4|1|ZQ|U|942
6SV4|1|ZQ|U|943
6SV4|1|ZQ|C|944
*
6SV4|1|ZQ|G|1375
6SV4|1|ZQ|C|1376
*
6SV4|1|ZQ|G|1431
6SV4|1|ZQ|C|1432
6SV4|1|ZQ|A|1433
6SV4|1|ZQ|G|1434
6SV4|1|ZQ|A|1435
6SV4|1|ZQ|U|1436
6SV4|1|ZQ|C|1437
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZE
- 60S ribosomal protein L4-A
- Chain ZG
- 60S ribosomal protein L32
- Chain ZS
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zQ
- 60S ribosomal protein L15-A
- Chain zR
- 60S ribosomal protein L28
Coloring options: