J5_6SV4_033
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6SV4|1|ZQ|G|2418, 6SV4|1|ZQ|A|2799, 6SV4|1|ZQ|G|2800, 6SV4|1|ZQ|A|2801, 6SV4|1|ZQ|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SV4_033 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.1798
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|ZQ|U|2416
6SV4|1|ZQ|U|2417
6SV4|1|ZQ|G|2418
6SV4|1|ZQ|A|2419
*
6SV4|1|ZQ|U|2611
6SV4|1|ZQ|U|2612
6SV4|1|ZQ|U|2613
6SV4|1|ZQ|G|2614
*
6SV4|1|ZQ|C|2627
6SV4|1|ZQ|A|2628
*
6SV4|1|ZQ|U|2650
6SV4|1|ZQ|G|2651
*
6SV4|1|ZQ|C|2798
6SV4|1|ZQ|A|2799
6SV4|1|ZQ|G|2800
6SV4|1|ZQ|A|2801
6SV4|1|ZQ|A|2802
6SV4|1|ZQ|A|2803
6SV4|1|ZQ|A|2804
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZB
- 60S ribosomal protein L18-A
- Chain ZJ
- 60S ribosomal protein L21-A
- Chain mc
- Transfer RNA; tRNA
- Chain zP
- 60S ribosomal protein L42-A
- Chain zQ
- 60S ribosomal protein L15-A
- Chain zR
- 60S ribosomal protein L28
- Chain zV
- 60S ribosomal protein L29
- Chain zW
- 60S ribosomal protein L2-A
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