J5_6T4Q_007

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

6T4Q|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6T4Q_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0753

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6T4Q|1|C2|C|31
6T4Q|1|C2|U|32
6T4Q|1|C2|U|33
6T4Q|1|C2|G|34
6T4Q|1|C2|U|35
*
6T4Q|1|C2|A|473
6T4Q|1|C2|A|474
6T4Q|1|C2|A|475
6T4Q|1|C2|U|476
6T4Q|1|C2|A|477
6T4Q|1|C2|A|478
6T4Q|1|C2|C|479
*
6T4Q|1|C2|G|509
6T4Q|1|C2|G|510
6T4Q|1|C2|A|511
6T4Q|1|C2|A|512
6T4Q|1|C2|U|513
6T4Q|1|C2|G|514
*
6T4Q|1|C2|C|543
6T4Q|1|C2|A|544
6T4Q|1|C2|A|545
6T4Q|1|C2|U|546
*
6T4Q|1|C2|A|592
6T4Q|1|C2|U|593
6T4Q|1|C2|A|594
6T4Q|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A