J5_6T83_007

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAUU*AAUAG

Length

28 nucleotides

Bulged bases

6T83|1|2b|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6T83_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.3371

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6T83|1|2b|C|31
6T83|1|2b|U|32
6T83|1|2b|U|33
6T83|1|2b|G|34
6T83|1|2b|U|35
*
6T83|1|2b|A|473
6T83|1|2b|A|474
6T83|1|2b|A|475
6T83|1|2b|U|476
6T83|1|2b|A|477
6T83|1|2b|A|478
6T83|1|2b|C|479
*
6T83|1|2b|G|509
6T83|1|2b|G|510
6T83|1|2b|A|511
6T83|1|2b|A|512
6T83|1|2b|U|513
6T83|1|2b|G|514
*
6T83|1|2b|C|543
6T83|1|2b|A|544
6T83|1|2b|A|545
6T83|1|2b|U|546
6T83|1|2b|U|547
*
6T83|1|2b|A|591
6T83|1|2b|A|592
6T83|1|2b|U|593
6T83|1|2b|A|594
6T83|1|2b|G|595

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Jb

40S ribosomal protein S9-A

Chain Xb

40S ribosomal protein S23-A

Chain eb

40S ribosomal protein S30-A