J5_6TBV_003
3D structure
- PDB id
- 6TBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6TBV|1|16S1|A|60, 6TBV|1|16S1|A|109, 6TBV|1|16S1|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TBV_003 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0959
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6TBV|1|16S1|C|58
6TBV|1|16S1|A|59
6TBV|1|16S1|A|60
6TBV|1|16S1|G|61
*
6TBV|1|16S1|C|106
6TBV|1|16S1|G|107
6TBV|1|16S1|G|108
6TBV|1|16S1|A|109
6TBV|1|16S1|C|110
6TBV|1|16S1|G|111
6TBV|1|16S1|G|112
6TBV|1|16S1|G|113
*
6TBV|1|16S1|C|314
6TBV|1|16S1|A|315
6TBV|1|16S1|C|316
*
6TBV|1|16S1|G|337
6TBV|1|16S1|A|338
6TBV|1|16S1|C|339
*
6TBV|1|16S1|G|350
6TBV|1|16S1|G|351
6TBV|1|16S1|C|352
6TBV|1|16S1|A|353
6TBV|1|16S1|G|354
Current chains
- Chain 16S1
- 16S rRNA
Nearby chains
- Chain L141
- 50S ribosomal protein L14
- Chain L191
- 50S ribosomal protein L19
- Chain S161
- 30S ribosomal protein S16
- Chain S201
- 30S ribosomal protein S20
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