J5_6TH6_006

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGAGUU*AGAC*GUUC*GC*GCGGAUC

Length

23 nucleotides

Bulged bases

6TH6|1|BA|U|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6TH6_006 not in the Motif Atlas

Homologous match to J5_4V9F_003

Geometric discrepancy: 0.124

The information below is about J5_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_15067.1

Basepair signature

cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

6TH6|1|BA|G|675
6TH6|1|BA|G|676
6TH6|1|BA|A|677
6TH6|1|BA|G|678
6TH6|1|BA|U|679
6TH6|1|BA|U|680
*
6TH6|1|BA|A|794
6TH6|1|BA|G|795
6TH6|1|BA|A|796
6TH6|1|BA|C|797
*
6TH6|1|BA|G|937
6TH6|1|BA|U|938
6TH6|1|BA|U|939
6TH6|1|BA|C|940
*
6TH6|1|BA|G|1331
6TH6|1|BA|C|1332
*
6TH6|1|BA|G|1385
6TH6|1|BA|C|1386
6TH6|1|BA|G|1387
6TH6|1|BA|G|1388
6TH6|1|BA|A|1389
6TH6|1|BA|U|1390
6TH6|1|BA|C|1391

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain Bd

50S ribosomal protein L32e