J5_6TNN_001
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 6TNN|1|U|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TNN_001 not in the Motif Atlas
- Homologous match to J5_4WF9_001
- Geometric discrepancy: 0.1004
- The information below is about J5_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6TNN|1|U|C|45
6TNN|1|U|G|46
6TNN|1|U|A|47
6TNN|1|U|U|48
6TNN|1|U|G|49
6TNN|1|U|A|50
6TNN|1|U|A|51
6TNN|1|U|G|52
*
6TNN|1|U|C|113
6TNN|1|U|G|114
6TNN|1|U|A|115
6TNN|1|U|A|116
6TNN|1|U|U|117
6TNN|1|U|G|118
*
6TNN|1|U|C|127
6TNN|1|U|A|128
*
6TNN|1|U|U|147
6TNN|1|U|A|148
6TNN|1|U|U|149
*
6TNN|1|U|A|176
6TNN|1|U|A|177
6TNN|1|U|G|178
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
Coloring options: