J5_6TPQ_003
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UA*UA
- Length
- 15 nucleotides
- Bulged bases
- 6TPQ|1|U|A|576, 6TPQ|1|U|U|604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TPQ_003 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.1031
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6TPQ|1|U|U|575
6TPQ|1|U|A|576
6TPQ|1|U|G|577
*
6TPQ|1|U|C|602
6TPQ|1|U|G|603
6TPQ|1|U|U|604
6TPQ|1|U|G|605
6TPQ|1|U|C|606
*
6TPQ|1|U|G|619
6TPQ|1|U|A|620
6TPQ|1|U|A|621
*
6TPQ|1|U|U|1299
6TPQ|1|U|A|1300
*
6TPQ|1|U|U|2044
6TPQ|1|U|A|2045
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain j
- 50S ribosomal protein L20
- Chain k
- 50S ribosomal protein L21
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
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