J5_6U48_002
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6U48|1|CA|A|532, 6U48|1|CA|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6U48_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0672
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6U48|1|CA|C|531
6U48|1|CA|A|532
6U48|1|CA|G|533
*
6U48|1|CA|C|560
6U48|1|CA|G|561
6U48|1|CA|U|562
6U48|1|CA|A|563
6U48|1|CA|C|564
*
6U48|1|CA|G|577
6U48|1|CA|G|578
6U48|1|CA|G|579
*
6U48|1|CA|C|1261
6U48|1|CA|A|1262
*
6U48|1|CA|U|2017
6U48|1|CA|G|2018
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C1
- 50S ribosomal protein bL32
- Chain CE
- 50S ribosomal protein uL4
- Chain CK
- 50S ribosomal protein uL13
- Chain CR
- 50S ribosomal protein bL20
- Chain CS
- 50S ribosomal protein bL21
- Chain CT
- 50S ribosomal protein uL22
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