J5_6U48_004

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6U48|1|CA|U|1758, 6U48|1|CA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6U48_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0638

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|G|1674
6U48|1|CA|C|1675
6U48|1|CA|A|1676
6U48|1|CA|A|1677
6U48|1|CA|A|1678
6U48|1|CA|A|1679
6U48|1|CA|U|1680
6U48|1|CA|G|1681
6U48|1|CA|G|1682
*
6U48|1|CA|C|1706
6U48|1|CA|G|1707
*
6U48|1|CA|U|1751
6U48|1|CA|C|1752
*
6U48|1|CA|G|1756
6U48|1|CA|A|1757
6U48|1|CA|U|1758
6U48|1|CA|A|1759
6U48|1|CA|C|1760
6U48|1|CA|C|1761
6U48|1|CA|A|1762
6U48|1|CA|G|1763
6U48|1|CA|C|1764
*
6U48|1|CA|G|1988
6U48|1|CA|G|1989
6U48|1|CA|C|1990

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein uL3

Chain CL

50S ribosomal protein uL14

Chain CQ

50S ribosomal protein bL19