3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6VU3|1|a|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6VU3_006 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0396
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6VU3|1|a|C|584
6VU3|1|a|G|585
6VU3|1|a|A|586
6VU3|1|a|C|587
6VU3|1|a|U|588
6VU3|1|a|U|589
*
6VU3|1|a|A|668
6VU3|1|a|G|669
6VU3|1|a|A|670
6VU3|1|a|C|671
*
6VU3|1|a|G|809
6VU3|1|a|U|810
6VU3|1|a|U|811
6VU3|1|a|C|812
*
6VU3|1|a|G|1195
6VU3|1|a|C|1196
*
6VU3|1|a|G|1250
6VU3|1|a|C|1251
6VU3|1|a|G|1252
6VU3|1|a|A|1253
6VU3|1|a|A|1254
6VU3|1|a|U|1255
6VU3|1|a|G|1256

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L21
Chain l
50S ribosomal protein L4
Chain o
50S ribosomal protein L35
Chain u
50S ribosomal protein L15
Chain z
50S ribosomal protein L20

Coloring options:


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