J5_6VWL_006

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6VWL|1|2|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VWL_006 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0625

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6VWL|1|2|C|584
6VWL|1|2|G|585
6VWL|1|2|A|586
6VWL|1|2|C|587
6VWL|1|2|U|588
6VWL|1|2|U|589
*
6VWL|1|2|A|668
6VWL|1|2|G|669
6VWL|1|2|A|670
6VWL|1|2|C|671
*
6VWL|1|2|G|809
6VWL|1|2|U|810
6VWL|1|2|U|811
6VWL|1|2|C|812
*
6VWL|1|2|G|1195
6VWL|1|2|C|1196
*
6VWL|1|2|G|1250
6VWL|1|2|C|1251
6VWL|1|2|G|1252
6VWL|1|2|A|1253
6VWL|1|2|A|1254
6VWL|1|2|U|1255
6VWL|1|2|G|1256

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21