J5_6VWL_009
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6VWL|1|2|U|2076, 6VWL|1|2|G|2428, 6VWL|1|2|G|2429, 6VWL|1|2|A|2430, 6VWL|1|2|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6VWL_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1082
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6VWL|1|2|U|2074
6VWL|1|2|U|2075
6VWL|1|2|U|2076
6VWL|1|2|A|2077
*
6VWL|1|2|U|2243
6VWL|1|2|U|2244
6VWL|1|2|U|2245
6VWL|1|2|G|2246
*
6VWL|1|2|C|2258
6VWL|1|2|U|2259
*
6VWL|1|2|A|2281
6VWL|1|2|G|2282
*
6VWL|1|2|C|2427
6VWL|1|2|G|2428
6VWL|1|2|G|2429
6VWL|1|2|A|2430
6VWL|1|2|U|2431
6VWL|1|2|A|2432
6VWL|1|2|A|2433
6VWL|1|2|A|2434
6VWL|1|2|A|2435
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain AB
- 50S ribosomal protein L35
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
- Chain V
- 50S ribosomal protein L28
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