J5_6VYT_007

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6VYT|1|a|U|1758, 6VYT|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYT_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VYT|1|a|G|1674
6VYT|1|a|C|1675
6VYT|1|a|A|1676
6VYT|1|a|A|1677
6VYT|1|a|A|1678
6VYT|1|a|A|1679
6VYT|1|a|U|1680
6VYT|1|a|G|1681
6VYT|1|a|G|1682
*
6VYT|1|a|C|1706
6VYT|1|a|G|1707
*
6VYT|1|a|U|1751
6VYT|1|a|C|1752
*
6VYT|1|a|G|1756
6VYT|1|a|A|1757
6VYT|1|a|U|1758
6VYT|1|a|A|1759
6VYT|1|a|C|1760
6VYT|1|a|C|1761
6VYT|1|a|A|1762
6VYT|1|a|G|1763
6VYT|1|a|C|1764
*
6VYT|1|a|G|1988
6VYT|1|a|G|1989
6VYT|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19