J5_6VYU_007

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6VYU|1|a|U|1758, 6VYU|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYU_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VYU|1|a|G|1674
6VYU|1|a|C|1675
6VYU|1|a|A|1676
6VYU|1|a|A|1677
6VYU|1|a|A|1678
6VYU|1|a|A|1679
6VYU|1|a|U|1680
6VYU|1|a|G|1681
6VYU|1|a|G|1682
*
6VYU|1|a|C|1706
6VYU|1|a|G|1707
*
6VYU|1|a|U|1751
6VYU|1|a|C|1752
*
6VYU|1|a|G|1756
6VYU|1|a|A|1757
6VYU|1|a|U|1758
6VYU|1|a|A|1759
6VYU|1|a|C|1760
6VYU|1|a|C|1761
6VYU|1|a|A|1762
6VYU|1|a|G|1763
6VYU|1|a|C|1764
*
6VYU|1|a|G|1988
6VYU|1|a|G|1989
6VYU|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19