J5_6VYX_005
3D structure
- PDB id
- 6VYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.9 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6VYX|1|a|A|532, 6VYX|1|a|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6VYX_005 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0431
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6VYX|1|a|C|531
6VYX|1|a|A|532
6VYX|1|a|G|533
*
6VYX|1|a|C|560
6VYX|1|a|G|561
6VYX|1|a|U|562
6VYX|1|a|A|563
6VYX|1|a|C|564
*
6VYX|1|a|G|577
6VYX|1|a|G|578
6VYX|1|a|G|579
*
6VYX|1|a|C|1261
6VYX|1|a|A|1262
*
6VYX|1|a|U|2017
6VYX|1|a|G|2018
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L21
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain l
- 50S ribosomal protein L4
- Chain z
- 50S ribosomal protein L20
Coloring options: