J5_6VYX_007

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6VYX|1|a|U|1758, 6VYX|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYX_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VYX|1|a|G|1674
6VYX|1|a|C|1675
6VYX|1|a|A|1676
6VYX|1|a|A|1677
6VYX|1|a|A|1678
6VYX|1|a|A|1679
6VYX|1|a|U|1680
6VYX|1|a|G|1681
6VYX|1|a|G|1682
*
6VYX|1|a|C|1706
6VYX|1|a|G|1707
*
6VYX|1|a|U|1751
6VYX|1|a|C|1752
*
6VYX|1|a|G|1756
6VYX|1|a|A|1757
6VYX|1|a|U|1758
6VYX|1|a|A|1759
6VYX|1|a|C|1760
6VYX|1|a|C|1761
6VYX|1|a|A|1762
6VYX|1|a|G|1763
6VYX|1|a|C|1764
*
6VYX|1|a|G|1988
6VYX|1|a|G|1989
6VYX|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19