3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
6VZ3|1|a|U|1758, 6VZ3|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6VZ3_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0554
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6VZ3|1|a|G|1674
6VZ3|1|a|C|1675
6VZ3|1|a|A|1676
6VZ3|1|a|A|1677
6VZ3|1|a|A|1678
6VZ3|1|a|A|1679
6VZ3|1|a|U|1680
6VZ3|1|a|G|1681
6VZ3|1|a|G|1682
*
6VZ3|1|a|C|1706
6VZ3|1|a|G|1707
*
6VZ3|1|a|U|1751
6VZ3|1|a|C|1752
*
6VZ3|1|a|G|1756
6VZ3|1|a|A|1757
6VZ3|1|a|U|1758
6VZ3|1|a|A|1759
6VZ3|1|a|C|1760
6VZ3|1|a|C|1761
6VZ3|1|a|A|1762
6VZ3|1|a|G|1763
6VZ3|1|a|C|1764
*
6VZ3|1|a|G|1988
6VZ3|1|a|G|1989
6VZ3|1|a|C|1990

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain t
50S ribosomal protein L14
Chain y
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2246 s