J5_6W6P_001
3D structure
- PDB id
- 6W6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MultiBody Refinement of 70S Ribosome from Enterococcus faecalis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAC*GAG
- Length
- 22 nucleotides
- Bulged bases
- 6W6P|1|A|U|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6W6P_001 not in the Motif Atlas
- Homologous match to J5_4WF9_001
- Geometric discrepancy: 0.0967
- The information below is about J5_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.2
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6W6P|1|A|C|48
6W6P|1|A|G|49
6W6P|1|A|A|50
6W6P|1|A|U|51
6W6P|1|A|G|52
6W6P|1|A|A|53
6W6P|1|A|A|54
6W6P|1|A|G|55
*
6W6P|1|A|C|116
6W6P|1|A|G|117
6W6P|1|A|A|118
6W6P|1|A|A|119
6W6P|1|A|U|120
6W6P|1|A|G|121
*
6W6P|1|A|C|130
6W6P|1|A|A|131
*
6W6P|1|A|U|150
6W6P|1|A|A|151
6W6P|1|A|C|152
*
6W6P|1|A|G|178
6W6P|1|A|A|179
6W6P|1|A|G|180
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain U
- 50S ribosomal protein L23
Coloring options: