J5_6W77_003

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6W77|1|A|A|60, 6W77|1|A|A|109, 6W77|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6W77_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1062

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6W77|1|A|C|58
6W77|1|A|A|59
6W77|1|A|A|60
6W77|1|A|G|61
*
6W77|1|A|C|106
6W77|1|A|G|107
6W77|1|A|G|108
6W77|1|A|A|109
6W77|1|A|C|110
6W77|1|A|G|111
6W77|1|A|G|112
6W77|1|A|G|113
*
6W77|1|A|C|314
6W77|1|A|A|315
6W77|1|A|C|316
*
6W77|1|A|G|337
6W77|1|A|A|338
6W77|1|A|C|339
*
6W77|1|A|G|350
6W77|1|A|G|351
6W77|1|A|C|352
6W77|1|A|A|353
6W77|1|A|G|354

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20