J5_6WD9_003
3D structure
- PDB id
- 6WD9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6WD9|1|1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WD9_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0909
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6WD9|1|1|C|584
6WD9|1|1|G|585
6WD9|1|1|A|586
6WD9|1|1|C|587
6WD9|1|1|U|588
6WD9|1|1|U|589
*
6WD9|1|1|A|668
6WD9|1|1|G|669
6WD9|1|1|A|670
6WD9|1|1|C|671
*
6WD9|1|1|G|809
6WD9|1|1|U|810
6WD9|1|1|U|811
6WD9|1|1|C|812
*
6WD9|1|1|G|1195
6WD9|1|1|C|1196
*
6WD9|1|1|G|1250
6WD9|1|1|C|1251
6WD9|1|1|G|1252
6WD9|1|1|A|1253
6WD9|1|1|A|1254
6WD9|1|1|U|1255
6WD9|1|1|G|1256
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
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